Stem-loop vca-MIR396b

Accession

MI0033010

Description

Vriesea carinata vca-MIR396b precursor miRNA

Sequence

uauguucUCCACAGGCUUUCUUGAACUAugaacucuaagggauuuaucuucuuuuuuuucuucuuuuuauguauuguuuuuuuuuuuaaaggaaaaaaaaauuagaaagaaagauugauugauuagaagaggaggaggaggaauagucuugaguuguugauagUUCAAGAAAGUUCGUGGAAAacaug
((((((.(((((.((((((((((((((((.(((.....((((((..((((((((((((((((((..(((......((((((((((((((............))))))))))))))....)))..))))))))))))))))))..)))))).....))).)))))))))))))))).))))).))))))

Structure

      c     A                g   ucuaa      ua                  uu   uguauu              aggaa 
uauguu UCCAC GGCUUUCUUGAACUAu aac     gggauu  ucuucuuuuuuuucuucu  uua      guuuuuuuuuuuaa     a
|||||| ||||| |||||||||||||||| |||     ||||||  ||||||||||||||||||  |||      ||||||||||||||      
guacaA AGGUG UUGAAAGAACUUgaua uug     uucuga  aggaggaggaggagaaga  agu      uagaaagaaagauu     a
      A     C                g   uugag      ua                  uu   --uagu              aaaaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR396b-5p

• Accession: MIMAT0041047
• Description: Vriesea carinata vca-miR396b-5p mature miRNA
• Sequence: 8 - UCCACAGGCUUUCUUGAACUA - 28
• Evidence: experimental ; Illumina [1]

Mature vca-miR396b-3p

• Accession: MIMAT0041048
• Description: Vriesea carinata vca-miR396b-3p mature miRNA
• Sequence: 164 - UUCAAGAAAGUUCGUGGAAA - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223