Stem-loop vca-MIR10210

Accession

MI0033009

Description

Vriesea carinata vca-MIR10210 precursor miRNA

Sequence

ggaacagaguGUUGUCCUAUGUUCCGGCAGAuugcagugcagaucuugcaagguagcaaauagaauuuaaaauagcagagccacguagaagauaaaaagaaggaaaaauaggugauagaagagaaaaugauuagcaguguucguucccuuaggaagguucucagauuccauaaacuuuuacuuggucauauaucucgauugcagucUGCAGGAGUGUAGGAUAACGCuuuguucc
(((((((((((((((((((((((((.((((((((((((..((((.((((......))))....................((((.(((((((..................(((.((..(((.(...............).)))..)))))..((((..........)))).....))))))).)))).....))))..)))))))))))).)))))))))))))))))))))))))

Structure

                         G            gc    cuugcaagguagcaaauagaauuuaaaauagcaga    c       -------auaaaaagaaggaaaaau   u  ua   g gaaaau 
ggaacagaguGUUGUCCUAUGUUCC GCAGAuugcagu  agau                                   gcca guagaag                         agg ga  gaa a      g
||||||||||||||||||||||||| ||||||||||||  ||||                                   |||| |||||||                         ||| ||  ||| |      a
ccuuguuuCGCAAUAGGAUGUGAGG CGUcugacguua  ucua                                   uggu cauuuuc                         ucc cu  cuu u      u
                         A            gc    ------------------------------uauac    u       aaauaccuuagacucuuggaaggau   -  ug   g gacgau 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR10210-5p

• Accession: MIMAT0041045
• Description: Vriesea carinata vca-miR10210-5p mature miRNA
• Sequence: 11 - GUUGUCCUAUGUUCCGGCAGA - 31
• Evidence: experimental ; Illumina [1]

Mature vca-miR10210-3p

• Accession: MIMAT0041046
• Description: Vriesea carinata vca-miR10210-3p mature miRNA
• Sequence: 207 - UGCAGGAGUGUAGGAUAACGC - 227
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223