Stem-loop vca-MIR10209

Accession

MI0033007

Description

Vriesea carinata vca-MIR10209 precursor miRNA

Sequence

acuuggUCCGCCACGUCAUCUGUGUACcgcaaaagugcauccacccacggauucgucuuugaugugcgguggagauugggacgagaugggcgauggagggcuuaugcccucgcgguUCACGGAUGACGUGGCGGACCaggu
((((((((((((((((((((((((.(((((.......((((..((((....((((((((.(((.(.(...).).))))))))))).)))).))))((((((....))))))))))).))))))))))))))))))))))))

Structure

                        U     ---------aaaagug    ca    cgga        u   g g g 
acuuggUCCGCCACGUCAUCUGUG ACcgc                cauc  ccca    uucgucuu gau u c  
|||||||||||||||||||||||| |||||                ||||  ||||    |||||||| ||| | | g
uggaCCAGGCGGUGCAGUAGGCAC uggcg                guag  gggu    gagcaggg uua a g  
                        U     cucccguauucgggag    -c    ---a        -   g g u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR10209-5p

• Accession: MIMAT0041041
• Description: Vriesea carinata vca-miR10209-5p mature miRNA
• Sequence: 7 - UCCGCCACGUCAUCUGUGUAC - 27
• Evidence: experimental ; Illumina [1]

Mature vca-miR10209-3p

• Accession: MIMAT0041042
• Description: Vriesea carinata vca-miR10209-3p mature miRNA
• Sequence: 117 - UCACGGAUGACGUGGCGGACC - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223