Stem-loop vca-MIR10207

Accession

MI0033005

Description

Vriesea carinata vca-MIR10207 precursor miRNA

Sequence

gggaaaugaucgucuggauauaguccaucauguuagcuaugcacugccuagugaucugccaucgaugucaucuuuacuuucauucuccaauacuaaaaacauaauguuagauuuggaauagcacgcagaaaauuaguuuguaaggauugaaAGUAAAGAUGGGAUGGAUGGCAGAUUCACUAGGUGGUCCAUGGCUuaugugguggaccagguccaagcaauaauuucuu
.((((((.((.((.(((((...(((((((((((.(((((((.(((((((((((((((((((((.((.(((((((((((((((.(((.(((.(((((........(((((.........))))).........))))))))...))).))))))))))))))).)).))))))))).)))))))))))).))))))).)))))))))))...))))).)).)).)))))).

Structure

g      g  c  c     aua           u       c            -         g  g               u   --c   u     -aaacauaa     gau 
 ggaaau au gu uggau   guccaucaugu agcuaug acugccuaguga ucugccauc au ucaucuuuacuuuca ucu   caa acuaa         uguua   u
 |||||| || || |||||   ||||||||||| ||||||| |||||||||||| ||||||||| || ||||||||||||||| |||   ||| |||||         |||||   u
 ucuuua ua cg accug   cagguggugua UCGGUAC UGGUGGAUCACU AGACGGUAG UA GGUAGAAAUGAaagu agg   guu ugauu         acgau   g
u      a  a  a     gac           u       C            U         G  G               u   aau   -     aaaagacgc     aag 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR10207-5p

• Accession: MIMAT0041037
• Description: Vriesea carinata vca-miR10207-5p mature miRNA
• Sequence: 152 - AGUAAAGAUGGGAUGGAUGGCAGA - 175
• Evidence: experimental ; Illumina [1]

Mature vca-miR10207-3p

• Accession: MIMAT0041038
• Description: Vriesea carinata vca-miR10207-3p mature miRNA
• Sequence: 173 - AGAUUCACUAGGUGGUCCAUGGCU - 196
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223