Stem-loop vca-MIR10205

Accession

MI0033002

Description

Vriesea carinata vca-MIR10205 precursor miRNA

Sequence

uuuauucUCCUGGAUAAUACAAUAAUUGCGCuuagagaaguugauggugacagaacuuacauuguacaugugacuagucauuuggcaaauuuauaugacaucagucacccuaagcgcAAUUAUUGUAUCAUUUAGGGGGGAuaaa
.((((((((((((((.(((((((((((((((((((..........((((((.((........(((.(((((((...(((....)))....)))))))))))).))))))))))))))))))))))))).))))).))))))))).

Structure

u         -     A                   agaaguugau      a  acuuacau   a       -cua   a 
 uuauucUCC UGGAU AUACAAUAAUUGCGCuuag          ggugac ga        ugu cauguga    guc u
 ||||||||| ||||| |||||||||||||||||||          |||||| ||        ||| |||||||    |||  
 aauAGGGGG AUUUA UAUGUUAUUAAcgcgaauc          ccacug cu        aca guauauu    cgg u
a         G     C                   ----------      a  --------   -       uaaa   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR10205-5p

• Accession: MIMAT0041031
• Description: Vriesea carinata vca-miR10205-5p mature miRNA
• Sequence: 8 - UCCUGGAUAAUACAAUAAUUGCGC - 31
• Evidence: experimental ; Illumina [1]

Mature vca-miR10205-3p

• Accession: MIMAT0041032
• Description: Vriesea carinata vca-miR10205-3p mature miRNA
• Sequence: 118 - AAUUAUUGUAUCAUUUAGGGGGGA - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223