Stem-loop vca-MIR10204

Accession

MI0033001

Description

Vriesea carinata vca-MIR10204 precursor miRNA

Sequence

gacacguaaacccuucgaaagcugccaaucauUUCCGGUCUGGCUUACGACAUcauuguauaugauuauauuggauuuauauugcaauacuugggagaaugagggcgcuguugucgucuucaagcaggacauguaaauccuacauaugacgauauaaucaucuauagugaugucguaaaucagaccgggaucaaUUGACAGCUUUCAAAGGGUUUacuuguc
((((.((((((((((.((((((((.((((...(((((((((((.((((((((((((((((.(((((((((((((((((((((..(....(((((.(((.(((.(((...))).)))))))))))...)..))))))))))..........))))))))))).)))))))))))))))).)))))))))))...)))).)))))))).)))))))))).))))

Structure

    c          c        c    cau           C                u           ----------          ug aaua     g   a   g   g 
gaca guaaacccuu gaaagcug caau   UUCCGGUCUGG UUACGACAUcauugua augauuauauu          ggauuuauau  c    cuugg aga uga ggc  
|||| |||||||||| |||||||| ||||   ||||||||||| |||||||||||||||| |||||||||||          ||||||||||  |    ||||| ||| ||| ||| c
cugu caUUUGGGAA CUUUCGAC GUUa   agggccagacu aaugcuguagugauau uacuaauauag          ccuaaaugua  g    gaacu ucu gcu uug  
    u          A        A    acu           a                c           caguauacau          ca -gac     -   -   g   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR10204-5p

• Accession: MIMAT0041029
• Description: Vriesea carinata vca-miR10204-5p mature miRNA
• Sequence: 33 - UUCCGGUCUGGCUUACGACAU - 53
• Evidence: experimental ; Illumina [1]

Mature vca-miR10204-3p

• Accession: MIMAT0041030
• Description: Vriesea carinata vca-miR10204-3p mature miRNA
• Sequence: 195 - UUGACAGCUUUCAAAGGGUUU - 215
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223