Stem-loop vca-MIR10202b

Accession

MI0032999

Description

Vriesea carinata vca-MIR10202b precursor miRNA

Sequence

uccacuagcaaUAAUAACUCGUUGGGUUCAAACCAuuaacccaaaauacuuaaacccaauuauuauuacuaggguccauaaugauauuggucuauaugugugauuggacugacgagaaugucagauGGUUUGGGCCCAACGAAUUauuauuacuagaggg
.((.((((.((((((((.((((((((((((((((((....((((.((((......(((((.(((((((..........)))))))))))).......))))..)))).(((((......))))))))))))))))))))))).)))))))).)))).)).

Structure

u  a    c        C                  -------------uaac    -a    -uuaaac     u       cuag 
 cc cuag aaUAAUAA UCGUUGGGUUCAAACCAu                 ccaa  auac       ccaau auuauua    g
 || |||| |||||||| ||||||||||||||||||                 ||||  ||||       ||||| |||||||     
 gg gauc uuauuaUU AGCAACCCGGGUUUGGua                 gguu  ugug       gguua uaguaau    g
g  a    a        A                  gacuguaagagcaguca    ag    uauaucu     -       accu 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR10202b-5p

• Accession: MIMAT0041025
• Description: Vriesea carinata vca-miR10202b-5p mature miRNA
• Sequence: 12 - UAAUAACUCGUUGGGUUCAAACCA - 35
• Evidence: experimental ; Illumina [1]

Mature vca-miR10202b-3p

• Accession: MIMAT0041026
• Description: Vriesea carinata vca-miR10202b-3p mature miRNA
• Sequence: 127 - GGUUUGGGCCCAACGAAUU - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223