miRBase entry: vca-MIR535

Stem-loop vca-MIR535


Accession
MI0032997
Description
Vriesea carinata vca-MIR535 precursor miRNA


Sequence

gaaaguUGACGAUGAGAGAGAGCACGCuggucggcaaacaugcauugggacaugauugucuaccugcGUGCUCUCUCUCGUUGUCACCggcuuc
..(((((((((((((((((((((((((.(((.(((((.((((........)))).))))).))).)))))))))))))))))))))...)))).

Structure
ga    ---                     u   c     a    cau 
  aagu   UGACGAUGAGAGAGAGCACGC ggu ggcaa caug   u
  ||||   ||||||||||||||||||||| ||| ||||| ||||    
  uucg   ACUGUUGCUCUCUCUCGUGcg cca cuguu guac   g
-c    gCC                     u   u     a    agg 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature vca-miR535-5p

Accession MIMAT0041021
Description Vriesea carinata vca-miR535-5p mature miRNA
Sequence 7 - UGACGAUGAGAGAGAGCACGC - 27
Evidence experimental
Illumina [1]

Mature vca-miR535-3p

Accession MIMAT0041022
Description Vriesea carinata vca-miR535-3p mature miRNA
Sequence 68 - GUGCUCUCUCUCGUUGUCACC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23849128
    Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
    "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
    "Plant Sci (2013) 210:214-223