Stem-loop vca-MIR535

Accession

MI0032997

Description

Vriesea carinata vca-MIR535 precursor miRNA

Sequence

gaaaguUGACGAUGAGAGAGAGCACGCuggucggcaaacaugcauugggacaugauugucuaccugcGUGCUCUCUCUCGUUGUCACCggcuuc
..(((((((((((((((((((((((((.(((.(((((.((((........)))).))))).))).)))))))))))))))))))))...)))).

Structure

ga    ---                     u   c     a    cau 
  aagu   UGACGAUGAGAGAGAGCACGC ggu ggcaa caug   u
  ||||   ||||||||||||||||||||| ||| ||||| ||||    
  uucg   ACUGUUGCUCUCUCUCGUGcg cca cuguu guac   g
-c    gCC                     u   u     a    agg 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR535-5p

• Accession: MIMAT0041021
• Description: Vriesea carinata vca-miR535-5p mature miRNA
• Sequence: 7 - UGACGAUGAGAGAGAGCACGC - 27
• Evidence: experimental ; Illumina [1]

Mature vca-miR535-3p

• Accession: MIMAT0041022
• Description: Vriesea carinata vca-miR535-3p mature miRNA
• Sequence: 68 - GUGCUCUCUCUCGUUGUCACC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223