Stem-loop vca-MIR408

Accession

MI0032995

Description

Vriesea carinata vca-MIR408 precursor miRNA

Sequence

aaggagACGGGGACGAGGUCGGGCAUGcgagggguugaguccgcauagaaaaagauucccuaugcgggugcccuucccaUGCACUGCCUCUUCCCUGGCUccuu
((((((.((((((.((((.((((((((.(((((((....(((((((((...........))))))))).))))))).))))).))))))).)))))).))))))

Structure

      A      C    U   -     c       ugag         aaaa 
aaggag CGGGGA GAGG CGG GCAUG gaggggu    uccgcauag    a
|||||| |||||| |||| ||| ||||| |||||||    |||||||||    g
uuccUC GUCCCU CUCC GUC CGUac cuucccg    gggcguauc    a
      G      U    -   A     c       ---u         ccuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR408-5p

• Accession: MIMAT0041017
• Description: Vriesea carinata vca-miR408-5p mature miRNA
• Sequence: 7 - ACGGGGACGAGGUCGGGCAUG - 27
• Evidence: experimental ; Illumina [1]

Mature vca-miR408-3p

• Accession: MIMAT0041018
• Description: Vriesea carinata vca-miR408-3p mature miRNA
• Sequence: 80 - UGCACUGCCUCUUCCCUGGCU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223