Stem-loop vca-MIR397

Accession

MI0032994

Description

Vriesea carinata vca-MIR397 precursor miRNA

Sequence

gcaUCAUUGAGUGCAGCGUUGAUGaccgucgggaacgcauaguuugagagguuucaUCAGCGCUUCACUCAAUCAUGu
((((.((((((((.(((((((((((.(.((..((((.....))))..)).)..))))))))))).)))))))).))))

Structure

    C        C           -c g  gg    g 
gcaU AUUGAGUG AGCGUUGAUGa  c uc  gaac c
|||| |||||||| |||||||||||  | ||  |||| a
uGUA UAACUCAC UCGCGACUacu  g ag  uuug u
    C        U           uu g  ag    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR397-5p

• Accession: MIMAT0041015
• Description: Vriesea carinata vca-miR397-5p mature miRNA
• Sequence: 4 - UCAUUGAGUGCAGCGUUGAUG - 24
• Evidence: experimental ; Illumina [1]

Mature vca-miR397-3p

• Accession: MIMAT0041016
• Description: Vriesea carinata vca-miR397-3p mature miRNA
• Sequence: 57 - UCAGCGCUUCACUCAAUCAUG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223