Stem-loop vca-MIR396

Accession

MI0032993

Description

Vriesea carinata vca-MIR396 precursor miRNA

Sequence

uagucUUCCACAGCUUUCUUGAACUgcaucuauccuucaaaaggaagauuuggguucauguuugcgGUUCAAUAAAGCUGUGGGAAAuua
((((.((((((((((((.(((((((((((((.(((((...))))))))..............)))))))))).)))))))))))).))))

Structure

    c            C          --------------   a     c 
uagu UUCCACAGCUUU UUGAACUgca              ucu uccuu  
|||| |||||||||||| ||||||||||              ||| ||||| a
auuA AGGGUGUCGAAA AACUUGgcgu              aga aggaa  
    A            U          uuguacuuggguuu   -     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR396-5p

• Accession: MIMAT0041013
• Description: Vriesea carinata vca-miR396-5p mature miRNA
• Sequence: 6 - UUCCACAGCUUUCUUGAACU - 25
• Evidence: experimental ; Illumina [1]

Mature vca-miR396-3p

• Accession: MIMAT0041014
• Description: Vriesea carinata vca-miR396-3p mature miRNA
• Sequence: 67 - GUUCAAUAAAGCUGUGGGAAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223