Stem-loop vca-MIR172b

Accession

MI0032991

Description

Vriesea carinata vca-MIR172b precursor miRNA

Sequence

uugcaggugCAGCAUCAUCCAGAUUCACAUaaacuagcuagggcagaaauuuuucugcacugauaugAGAAUCUUGAUGAUGCUGCAUcggcaa
.(((.((((((((((((((.((((((.((((.......(((.((((((....)))))).))).)))).)))))).)))))))))))))).))).

Structure

u   a              C      A    aacuagc   g      a 
 ugc ggugCAGCAUCAUC AGAUUC CAUa       uag gcagaa u
 ||| |||||||||||||| |||||| ||||       ||| ||||||  
 acg cUACGUCGUAGUAG UCUAAG guau       guc cgucuu u
a   g              U      A    ------a   a      u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR172b-5p

• Accession: MIMAT0041009
• Description: Vriesea carinata vca-miR172b-5p mature miRNA
• Sequence: 10 - CAGCAUCAUCCAGAUUCACAU - 30
• Evidence: experimental ; Illumina [1]

Mature vca-miR172b-3p

• Accession: MIMAT0041010
• Description: Vriesea carinata vca-miR172b-3p mature miRNA
• Sequence: 68 - AGAAUCUUGAUGAUGCUGCAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223