Stem-loop vca-MIR172a

Accession

MI0032990

Description

Vriesea carinata vca-MIR172a precursor miRNA

Sequence

guguucgcugcuGUGGCAUCAUGAAGAUUCACAuaaaucuaaagcggcuuauuaauauuauuauuauuuuuccuuuugcgcugcuuuauagaugagaugAGAAUCUUGAUGAUGCUGCAUcggcaaauac
(((((.((((.(((((((((((.(((((((.(((..((((((((((((....(((((....))))).............)))))))..)))))...))).))))))).))))))))))).)))).)))))

Structure

     c    c           G       A   -aa     --       ---------uuau     u 
guguu gcug uGUGGCAUCAU AAGAUUC CAu   aucua  aagcggc             uaaua u
||||| |||| ||||||||||| ||||||| |||   |||||  |||||||             |||||  
cauaa cggc ACGUCGUAGUA UUCUAAG gua   uagau  uucgucg             auuau a
     a    U           G       A   gag     au       cguuuuccuuuuu     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR172a-5p

• Accession: MIMAT0041007
• Description: Vriesea carinata vca-miR172a-5p mature miRNA
• Sequence: 13 - GUGGCAUCAUGAAGAUUCACA - 33
• Evidence: experimental ; Illumina [1]

Mature vca-miR172a-3p

• Accession: MIMAT0041008
• Description: Vriesea carinata vca-miR172a-3p mature miRNA
• Sequence: 100 - AGAAUCUUGAUGAUGCUGCAU - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223