Stem-loop vca-MIR166c

Accession

MI0032985

Description

Vriesea carinata vca-MIR166c precursor miRNA

Sequence

uugaggGGAAUGUUGUCCGGCUCGAGGccgguagagaucgaucugaucgcuuuguguagagaucUCGGACCAGGCUUCAUUCCCCucaa
.(((((((((((..(((.((.((((((((..((.(((.((((...)))).))).))..).).)))))).)).)))..))))))))))).

Structure

u           UU   C  C      - - gg  g   u    c 
 ugaggGGAAUG  GUC GG UCGAGG c c  ua aga cgau  
 |||||||||||  ||| || |||||| | |  || ||| |||| u
 acuCCCCUUAC  CGG CC GGCUcu g g  gu uuu gcua  
a           UU   A  A      a a au  g   c    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR166c-5p

• Accession: MIMAT0040997
• Description: Vriesea carinata vca-miR166c-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCCGGCUCGAGG - 27
• Evidence: experimental ; Illumina [1]

Mature vca-miR166c-3p

• Accession: MIMAT0040998
• Description: Vriesea carinata vca-miR166c-3p mature miRNA
• Sequence: 65 - UCGGACCAGGCUUCAUUCCCC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223