Stem-loop vca-MIR166b

Accession

MI0032984

Description

Vriesea carinata vca-MIR166b precursor miRNA

Sequence

ggaagcuuuuucuuugaggGGAAUGUUGUCUGGCUCGAGGccgccauaacaauuuuucuuccauuuuuauuauuauuuuucuucgggaucUCGGACCAGGCUUCAUUCCCCccaaucauaauagcuucc
(((((((.((...(((.((((((((..((((((.((((((((...........................................)).)))))).))))))..)))))))).)))....)).)))))))

Structure

       u  -ucu   a        UU      C      -  gccauaacaauuuuucuucc 
ggaagcu uu    uug ggGGAAUG  GUCUGG UCGAGG cc                    a
||||||| ||    ||| ||||||||  |||||| |||||| ||                    u
ccuucga aa    aac CCCCUUAC  CGGACC GGCUcu gg                    u
       u  uacu   c        UU      A      a  gcuucuuuuuauuauuauuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR166b-5p

• Accession: MIMAT0040995
• Description: Vriesea carinata vca-miR166b-5p mature miRNA
• Sequence: 20 - GGAAUGUUGUCUGGCUCGAGG - 40
• Evidence: experimental ; Illumina [1]

Mature vca-miR166b-3p

• Accession: MIMAT0040996
• Description: Vriesea carinata vca-miR166b-3p mature miRNA
• Sequence: 91 - UCGGACCAGGCUUCAUUCCCC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223