Stem-loop vca-MIR159

Accession

MI0032981

Description

Vriesea carinata vca-MIR159 precursor miRNA

Sequence

gugGAGCUUCCUUGGGUCCAAAGAagggucuguuaggggcaauuuugcugcuggguuauggaucccacucuccuaucucauagaagaaaagaagagaaagaaagagugguagauggauuugaguauuugagauaguuuuaguggcuugcaugacacaggagcugcauuagcccuuacaugaucucuaUUUGGAUUGAAGGGAGCUCUAc
(((((((((((((.((((((((...((((((((.(((((((((...(((.(((.((((((.(..(((((...((((((((...............................................))))))))....)))))..).)))))).))).)))...))).))))))))).)))))...)))))))).)))))))))))))

Structure

             G        GAa     -   u      -   uuu   g   g      g uc     -cuc        uagaagaaaagaagagaaagaa 
gugGAGCUUCCUU GGUCCAAA   ggguc ugu aggggc aau   gcu cug guuaug a  ccacu    cuaucuca                      a
||||||||||||| ||||||||   ||||| ||| |||||| |||   ||| ||| |||||| |  |||||    ||||||||                      g
cAUCUCGAGGGAA UUAGGUUU   ucuag aca uucccg uua   cga gac caguac u  gguga    gauagagu                      a
             G        auc     u   -      a   cgu   g   a      g uc     uuuu        uuaugaguuuagguagauggug 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR159-5p

• Accession: MIMAT0040990
• Description: Vriesea carinata vca-miR159-5p mature miRNA
• Sequence: 4 - GAGCUUCCUUGGGUCCAAAGA - 24
• Evidence: experimental ; Illumina [1]

Mature vca-miR159-3p

• Accession: MIMAT0040991
• Description: Vriesea carinata vca-miR159-3p mature miRNA
• Sequence: 188 - UUUGGAUUGAAGGGAGCUCUA - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223