Stem-loop vca-MIR156a

Accession

MI0032979

Description

Vriesea carinata vca-MIR156a precursor miRNA

Sequence

ugaggcUGACAGAAGAGAGUGAGCACauaucgguaacgggcgguaggguuucuuugcggcguuccguuccguugcgUGCUCACUUCUCUUUCUGUCAGgcucu
.(((.(((((((((((((((((((((.((.(((.(((((((.((((((...)))))).))...)))))))).)).)))))))).)))).))))))))).))).

Structure

u   g         -    -        a  u   u     ---  g      u 
 gag cUGACAGAA GAGA GUGAGCAC ua cgg aacgg   gc guaggg  
 ||| ||||||||| |||| |||||||| || ||| |||||   || |||||| u
 cuc GACUGUCUU CUCU CACUCGUg gu gcc uugcc   cg cguuuc  
u   g         U    U        c  u   -     uug  g      u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vca-miR156a-5p

• Accession: MIMAT0040986
• Description: Vriesea carinata vca-miR156a-5p mature miRNA
• Sequence: 7 - UGACAGAAGAGAGUGAGCAC - 26
• Evidence: experimental ; Illumina [1]

Mature vca-miR156a-3p

• Accession: MIMAT0040987
• Description: Vriesea carinata vca-miR156a-3p mature miRNA
• Sequence: 77 - UGCUCACUUCUCUUUCUGUCAG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23849128
   Identification of potential miRNAs and their targets in Vriesea carinata (Poales, Bromeliaceae)
   "Guzman F, Almerao MP, Korbes AP, Christoff AP, Zanella CM, Bered F, Margis R"
   "Plant Sci (2013) 210:214-223