Stem-loop hpo-mir-10139

Accession

MI0032888

Description

Heligmosomoides polygyrus hpo-mir-10139 precursor miRNA

Sequence

gcucugaagcGAACGACGUCUGACGCCUAACgacagcucccagcucguggauuagucgaccaaacaAUGUGUCAGAUGGGUGGUUGAAgacuucauug
..(((..(((.(....(((((((((((((((.((((((...)))).)).).)))).............))))))))))..).)))..)))........

Structure

------gc   ga   G ACGA          -------------    - g  -    c 
        ucu  agc A    CGUCUGACGC             CUAA C ac agcu  
        |||  ||| |    ||||||||||             |||| | || |||| c
        agA  UUG U    GUAGACUGUG             gauu g ug ucga  
guuacuuc   AG   G --GG          UAacaaaccagcu    a g  c    c 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_43856: 1469-1566 [-]

Mature hpo-miR-10139-5p

• Accession: MIMAT0040858
• Description: Heligmosomoides polygyrus hpo-miR-10139-5p mature miRNA
• Sequence: 11 - GAACGACGUCUGACGCCUAAC - 31
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-10139-3p

• Accession: MIMAT0040859
• Description: Heligmosomoides polygyrus hpo-miR-10139-3p mature miRNA
• Sequence: 67 - AUGUGUCAGAUGGGUGGUUGAA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488