Stem-loop hpo-mir-5902

Accession

MI0032848

Description

Heligmosomoides polygyrus hpo-mir-5902 precursor miRNA

Sequence

caguaccuucUCUGGGAUGACACUACCCUUCAguaccucguugugAAGAGGAGUGUCCUCGCAGUGAaggucuucgc
.((.((((((.(((.((.((((((.(((((((..((...))..))))).)))))))).)).))).))))))))....

Structure

---c  u      U   G  U      A  -     gu  c 
    ag accuuc CUG GA GACACU CC CUUCA  ac  
    || |||||| ||| || |||||| || |||||  || u
    uc uggaAG GAC CU CUGUGA GG GAAgu  ug  
cgcu  -      U   G  C      -  A     gu  c 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_278211: 749-825 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5902

Mature hpo-miR-5902-5p

• Accession: MIMAT0040779
• Description: Heligmosomoides polygyrus hpo-miR-5902-5p mature miRNA
• Sequence: 11 - UCUGGGAUGACACUACCCUUCA - 32
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-5902-3p

• Accession: MIMAT0040780
• Description: Heligmosomoides polygyrus hpo-miR-5902-3p mature miRNA
• Sequence: 46 - AAGAGGAGUGUCCUCGCAGUGA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488