Stem-loop hpo-mir-40h

Accession

MI0032840

Description

Heligmosomoides polygyrus hpo-mir-40h precursor miRNA

Sequence

CCCGCAGAAUCACUCUGGUGACGcugucugagacaUCACCGGGAAUUCUGUGGUGA
.(((((((((...((((((((...((((...)))))))))))).)))))))))...

Structure

--C         CAC        CGc    u 
   CCGCAGAAU   UCUGGUGA   uguc  
   |||||||||   ||||||||   |||| g
   GGUGUCUUA   GGGCCACU   acag  
AGU         --A        ---    a 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_26756: 2494-2549 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40h

Mature hpo-miR-40h-5p

• Accession: MIMAT0040763
• Description: Heligmosomoides polygyrus hpo-miR-40h-5p mature miRNA
• Sequence: 1 - CCCGCAGAAUCACUCUGGUGACG - 23
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-40h-3p

• Accession: MIMAT0040764
• Description: Heligmosomoides polygyrus hpo-miR-40h-3p mature miRNA
• Sequence: 36 - UCACCGGGAAUUCUGUGGUGA - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488