Stem-loop hpo-mir-10090

Accession

MI0032830

Description

Heligmosomoides polygyrus hpo-mir-10090 precursor miRNA

Sequence

CGGCGAACAGCCUGUGAUGCCucgcaccgaggAAUCACAGUGCUUUCGUCCAGC
.((((((.((((((((((.(((((...))))).))))))).)))))))))....

Structure

---C      C   -       G     c 
    GGCGAA AGC CUGUGAU CCucg  
    |||||| ||| ||||||| ||||| a
    CUGCUU UCG GACACUA ggagc  
CGAC      -   U       A     c 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_106940: 3481-3534 [+]

Mature hpo-miR-10090-5p

• Accession: MIMAT0040743
• Description: Heligmosomoides polygyrus hpo-miR-10090-5p mature miRNA
• Sequence: 1 - CGGCGAACAGCCUGUGAUGCC - 21
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-10090-3p

• Accession: MIMAT0040744
• Description: Heligmosomoides polygyrus hpo-miR-10090-3p mature miRNA
• Sequence: 33 - AAUCACAGUGCUUUCGUCCAGC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488