Stem-loop hpo-mir-10080

Accession

MI0032818

Description

Heligmosomoides polygyrus hpo-mir-10080 precursor miRNA

Sequence

UUUCUCAGGUUGUCUCGUCCaucacugcuucucuucguuuugaaggcgcucuuAGCGUUGAUCUCACUGAGUUCC
...((((((..(((.(((.......(((((.((........)))))))......)))..)))..).)))))....

Structure

-UUU     - UU   -U   CCaucac     c  uuc 
    CUCAG G  GUC  CGU       ugcuu uc   g
    ||||| |  |||  |||       ||||| ||    
    GAGUC C  UAG  GCG       gcgga ag   u
CCUU     A UC   UU   -Auucuc     -  uuu 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_288434: 86-160 [+]

Mature hpo-miR-10080-5p

• Accession: MIMAT0040719
• Description: Heligmosomoides polygyrus hpo-miR-10080-5p mature miRNA
• Sequence: 1 - UUUCUCAGGUUGUCUCGUCC - 20
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-10080-3p

• Accession: MIMAT0040720
• Description: Heligmosomoides polygyrus hpo-miR-10080-3p mature miRNA
• Sequence: 54 - AGCGUUGAUCUCACUGAGUUCC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488