Stem-loop hpo-mir-10078

Accession

MI0032816

Description

Heligmosomoides polygyrus hpo-mir-10078 precursor miRNA

Sequence

AUCUCAUCCUGAUCGCCAguguuacaacugacagacgcacuGGUUUAUCGCAGACGAAGAAUG
.((((.((.((((.((((((((..(........)..))))))))..))))..)).).)))...

Structure

--A   - A  -C    -C        ua aac 
   UCU C UC  UGAU  GCCAgugu  c   u
   ||| | ||  ||||  ||||||||  |    
   AGA G AG  GCUA  UGGucacg  g   g
GUA   A C  AC    UU        ca aca 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_277036: 302-364 [-]

Mature hpo-miR-10078-5p

• Accession: MIMAT0040715
• Description: Heligmosomoides polygyrus hpo-miR-10078-5p mature miRNA
• Sequence: 1 - AUCUCAUCCUGAUCGCCA - 18
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-10078-3p

• Accession: MIMAT0040716
• Description: Heligmosomoides polygyrus hpo-miR-10078-3p mature miRNA
• Sequence: 42 - GGUUUAUCGCAGACGAAGAAUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488