Stem-loop hpo-mir-40e

Accession

MI0032769

Description

Heligmosomoides polygyrus hpo-mir-40e precursor miRNA

Sequence

cgcugcuaucCGUUGUAGGAUUCUCGUUGAGAcgucuuuggauucUCACCGGGCAUUCCUACGACUGAcgguuuagac
....(((.((.(((((((((.(((((.(((((.(((....)))))))).)))).).))))))))).)).)))......

Structure

--cgcu   a  C         U -    U     c   u 
      gcu uc GUUGUAGGA U CUCG UGAGA guc u
      ||| || ||||||||| | |||| ||||| |||  
      ugg AG CAGCAUCCU A GGGC ACUcu uag u
cagauu   c  U         U C    C     -   g 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_249479: 958-1035 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-40e

Mature hpo-miR-40e-5p

• Accession: MIMAT0040622
• Description: Heligmosomoides polygyrus hpo-miR-40e-5p mature miRNA
• Sequence: 11 - CGUUGUAGGAUUCUCGUUGAGA - 32
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-40e-3p

• Accession: MIMAT0040623
• Description: Heligmosomoides polygyrus hpo-miR-40e-3p mature miRNA
• Sequence: 46 - UCACCGGGCAUUCCUACGACUGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488