miRBase entry: hpo-mir-40d

Stem-loop hpo-mir-40d

Accession

MI0032757

Description

Heligmosomoides polygyrus hpo-mir-40d precursor miRNA

Sequence

CACUGCAGAUCAGCCAGUUGAAGcggauuggucuUCACCGGGUGCUUUGCAGUGGG
(((((((((.((.((.((.(((((......).)))))).)).)).)))))))))..

Structure

--         U  G  A  U    - gg 
  CACUGCAGA CA CC GU GAAG c  a
  ||||||||| || || || |||| |   
  GUGACGUUU GU GG CA CUuc g  u
GG         C  G  C  -    u gu

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_26756: 2282-2337 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-40d-5p

Accession	MIMAT0040598
Description	Heligmosomoides polygyrus hpo-miR-40d-5p mature miRNA
Sequence	1 - CACUGCAGAUCAGCCAGUUGAAG - 23
Evidence	experimental Illumina [1]

Mature hpo-miR-40d-3p

Accession	MIMAT0040599
Description	Heligmosomoides polygyrus hpo-miR-40d-3p mature miRNA
Sequence	35 - UCACCGGGUGCUUUGCAGUGGG - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488