Stem-loop hpo-mir-40b

Accession

MI0032744

Description

Heligmosomoides polygyrus hpo-mir-40b precursor miRNA

Sequence

gcuagccgcuCGUUGUAGGAUCGUCGUUGAAAcaugcguagcggauuUCACCGGGCAUUCCUAUGACGAAuggacgaaca
.....(((.(((((((((((...(((.(((((..(((...)))..))))).)))....))))))))))).))).......

Structure

--gcuag   c           -UCG   U     ca   g 
       ccg uCGUUGUAGGA    UCG UGAAA  ugc  
       ||| |||||||||||    ||| |||||  ||| u
       ggu AGCAGUAUCCU    GGC ACUuu  gcg  
acaagca   A           UACG   C     ag   a 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_26756: 2194-2273 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from hpo-mir-40b

Mature hpo-miR-40b-5p

• Accession: MIMAT0040574
• Description: Heligmosomoides polygyrus hpo-miR-40b-5p mature miRNA
• Sequence: 11 - CGUUGUAGGAUCGUCGUUGAAA - 32
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-40b-3p

• Accession: MIMAT0040575
• Description: Heligmosomoides polygyrus hpo-miR-40b-3p mature miRNA
• Sequence: 48 - UCACCGGGCAUUCCUAUGACGAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488