Stem-loop hpo-mir-43b

Accession

MI0032741

Description

Heligmosomoides polygyrus hpo-mir-43b precursor miRNA

Sequence

GAUUGCAAGGGCUAGUGAUUUGgcuacacggugcaUAUCACAGUUUCCUUGCUGUCCA
(((.(((((((((.(((((.(((((....))).)).))))))))..)))))).)))..

Structure

--   U      --   A     U  -   a 
  GAU GCAAGG  GCU GUGAU UG gcu c
  ||| ||||||  ||| ||||| || |||  
  CUG CGUUCC  UGA CACUA ac ugg a
AC   U      UU   -     U  g   c 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_104995: 57-114 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-43b

Mature hpo-miR-43b-5p

• Accession: MIMAT0040568
• Description: Heligmosomoides polygyrus hpo-miR-43b-5p mature miRNA
• Sequence: 1 - GAUUGCAAGGGCUAGUGAUUUG - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-43b-3p

• Accession: MIMAT0040569
• Description: Heligmosomoides polygyrus hpo-miR-43b-3p mature miRNA
• Sequence: 36 - UAUCACAGUUUCCUUGCUGUCCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488