Stem-loop hpo-mir-5983

Accession

MI0032737

Description

Heligmosomoides polygyrus hpo-mir-5983 precursor miRNA

Sequence

GAGUCUAUCGUGUCUCAAAGCgcgcucucagaugcUUUGGCACAUGUUAGGCCGGC
(.(((((.(((((.(((((((((.......).)))))))).))))).))))))...

Structure

--- A     U     C        - gc 
   G GUCUA CGUGU UCAAAGCg c  u
   | ||||| ||||| |||||||| |  c
   C CGGAU GUACA GGUUUcgu g  u
CGG -     U     C        a ac 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_43338: 3155-3210 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5983

Mature hpo-miR-5983-5p

• Accession: MIMAT0040560
• Description: Heligmosomoides polygyrus hpo-miR-5983-5p mature miRNA
• Sequence: 1 - GAGUCUAUCGUGUCUCAAAGC - 21
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-5983-3p

• Accession: MIMAT0040561
• Description: Heligmosomoides polygyrus hpo-miR-5983-3p mature miRNA
• Sequence: 36 - UUUGGCACAUGUUAGGCCGGC - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488