Stem-loop hpo-mir-10028

Accession

MI0032734

Description

Heligmosomoides polygyrus hpo-mir-10028 precursor miRNA

Sequence

cuccgagcccUGACCAUGGACUGAUAGAGGCGcugauaaggcuaucgUUUCCUGUCGGCUCACGGUCAGAgcgaagauag
.((...((.((((((.(((.(((((((.((.((.((((....)))))).))))))))).))).)))))).))...))...

Structure

--c  cga  c      A   A       A  C  u    a 
   uc   gc cUGACC UGG CUGAUAG GG Gc gaua g
   ||   || |||||| ||| ||||||| || || ||||  
   ag   cg GACUGG ACU GGCUGUC CU Ug cuau g
gau  aag  A      C   C       -  U  -    c 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_254048: 1443-1522 [+]

Mature hpo-miR-10028-5p

• Accession: MIMAT0040554
• Description: Heligmosomoides polygyrus hpo-miR-10028-5p mature miRNA
• Sequence: 11 - UGACCAUGGACUGAUAGAGGCG - 32
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-10028-3p

• Accession: MIMAT0040555
• Description: Heligmosomoides polygyrus hpo-miR-10028-3p mature miRNA
• Sequence: 48 - UUUCCUGUCGGCUCACGGUCAGA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488