Stem-loop hpo-mir-5948

Accession

MI0032724

Description

Heligmosomoides polygyrus hpo-mir-5948 precursor miRNA

Sequence

CGGGCGUUGAGUAUAUGCAUCuucuccugaacagAUCAAUAUACCCAAGGCUCGGA
(((((.(((.((((((..((((((....))..))))..)))))).))).)))))..

Structure

--     G   A      GC    --  u 
  CGGGC UUG GUAUAU  AUCu  uc c
  ||||| ||| ||||||  ||||  ||  
  GCUCG AAC CAUAUA  UAga  ag c
AG     G   C      AC    ca  u 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_49948: 1325-1380 [-]

Mature hpo-miR-5948-5p

• Accession: MIMAT0040534
• Description: Heligmosomoides polygyrus hpo-miR-5948-5p mature miRNA
• Sequence: 1 - CGGGCGUUGAGUAUAUGCAUC - 21
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-5948-3p

• Accession: MIMAT0040535
• Description: Heligmosomoides polygyrus hpo-miR-5948-3p mature miRNA
• Sequence: 35 - AUCAAUAUACCCAAGGCUCGGA - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488