Stem-loop hpo-mir-60b

Accession

MI0032711

Description

Heligmosomoides polygyrus hpo-mir-60b precursor miRNA

Literature search

1 open access papers mention hpo-mir-60b
(2 sentences)

Sequence

AACCAGAAUUUGACAUAAAAUCcaauuggcgaUAUUAUGCACAUUUUCUGGCGUA
..((((((..((.(((((.(((........))).)))))..))..))))))....

Structure

--AA      UU  -A     A   caa 
    CCAGAA  UG  CAUAA AUC   u
    ||||||  ||  ||||| |||    
    GGUCUU  AC  GUAUU Uag   u
AUGC      UU  AC     A   cgg 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_50781: 5953-6007 [-]

Mature hpo-miR-60b-5p

• Accession: MIMAT0040508
• Description: Heligmosomoides polygyrus hpo-miR-60b-5p mature miRNA
• Sequence: 1 - AACCAGAAUUUGACAUAAAAUC - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-60b-3p

• Accession: MIMAT0040509
• Description: Heligmosomoides polygyrus hpo-miR-60b-3p mature miRNA
• Sequence: 33 - UAUUAUGCACAUUUUCUGGCGUA - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488