Stem-loop hpo-mir-250

Accession

MI0032701

Description

Heligmosomoides polygyrus hpo-mir-250 precursor miRNA

Sequence

CCGGCAGUUGCCUCGUGAUCCGugaucaguagaUCGAAUCACAGCCAACUGCUGCU
.(((((((((.((.(((((...(((((....))))).))))))).)))))))))..

Structure

-C         C  C     CCG     a 
  CGGCAGUUG CU GUGAU   ugauc g
  ||||||||| || |||||   |||||  
  GUCGUCAAC GA CACUA   GCUag u
UC         C  -     --A     a 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_43338: 3014-3069 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-250

Mature hpo-miR-250-5p

• Accession: MIMAT0040488
• Description: Heligmosomoides polygyrus hpo-miR-250-5p mature miRNA
• Sequence: 1 - CCGGCAGUUGCCUCGUGAUCCG - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-250-3p

• Accession: MIMAT0040489
• Description: Heligmosomoides polygyrus hpo-miR-250-3p mature miRNA
• Sequence: 34 - UCGAAUCACAGCCAACUGCUGCU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488