Stem-loop hpo-mir-63b

Accession

MI0032694

Description

Heligmosomoides polygyrus hpo-mir-63b precursor miRNA

Literature search

1 open access papers mention hpo-mir-63b
(3 sentences)

Sequence

UCCUGUUCGCCAGUCGUCAUUGUcuuugcguguacUAUGACACUGUUGCGAAUUGGG
.((.((((((((((.(((((.(((.......).)).)))))))))..)))))).)).

Structure

U  U      --    C     U  - uu 
 CC GUUCGC  CAGU GUCAU GU c  u
 || ||||||  |||| ||||| || |  g
 GG UAAGCG  GUCA CAGUA ca g  c
G  U      UU    -     U  u ug 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_234356: 1079-1135 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-63b

Mature hpo-miR-63b-5p

• Accession: MIMAT0040474
• Description: Heligmosomoides polygyrus hpo-miR-63b-5p mature miRNA
• Sequence: 1 - UCCUGUUCGCCAGUCGUCAUUGU - 23
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-63b-3p

• Accession: MIMAT0040475
• Description: Heligmosomoides polygyrus hpo-miR-63b-3p mature miRNA
• Sequence: 36 - UAUGACACUGUUGCGAAUUGGG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488