Stem-loop hpo-mir-54b

Accession

MI0032691

Description

Heligmosomoides polygyrus hpo-mir-54b precursor miRNA

Sequence

CGAUUAUGAGAUGACUGGUGCAuguugagauuugUACCCGUAAUCUUCAUAGUCCGA
.(((((((((((.((.((((((..........)))))).)).))).))))))))...

Structure

--C        -   G  U      uguu 
   GAUUAUGA GAU AC GGUGCA    g
   |||||||| ||| || ||||||     
   CUGAUACU CUA UG CCAUgu    a
AGC        U   A  C      uuag 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_144429: 211-267 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-54b

Mature hpo-miR-54b-5p

• Accession: MIMAT0040468
• Description: Heligmosomoides polygyrus hpo-miR-54b-5p mature miRNA
• Sequence: 1 - CGAUUAUGAGAUGACUGGUGCA - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-54b-3p

• Accession: MIMAT0040469
• Description: Heligmosomoides polygyrus hpo-miR-54b-3p mature miRNA
• Sequence: 35 - UACCCGUAAUCUUCAUAGUCCGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488