Stem-loop hpo-mir-240

Accession

MI0032690

Description

Heligmosomoides polygyrus hpo-mir-240 precursor miRNA

Sequence

UAGGGGUUGCUCGUCCAGUCAGaaguauugauccuUACUGGCCUCGUAACUUCUAGC
((((((((((..(.(((((.((...........)).))))).)..))))))))))..

Structure

--          UC U     C  aagu 
  UAGGGGUUGC  G CCAGU AG    a
  ||||||||||  | ||||| ||    u
  AUCUUCAAUG  C GGUCA uc    u
CG          CU C     U  cuag 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_211742: 571-627 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-240

Mature hpo-miR-240-5p

• Accession: MIMAT0040466
• Description: Heligmosomoides polygyrus hpo-miR-240-5p mature miRNA
• Sequence: 1 - UAGGGGUUGCUCGUCCAGUCAG - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-240-3p

• Accession: MIMAT0040467
• Description: Heligmosomoides polygyrus hpo-miR-240-3p mature miRNA
• Sequence: 36 - UACUGGCCUCGUAACUUCUAGC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488