Stem-loop hpo-mir-55

Accession

MI0032682

Description

Heligmosomoides polygyrus hpo-mir-55 precursor miRNA

Sequence

CGGUGGAAAUUGUUCGGUUGUGccucguuugccaUACCCGUAUGAGUUUCCGCUGAG
(((((((((((...(((.((((.(......).)))).)))....)))))))))))..

Structure

--           -GUU   U    c uc 
  CGGUGGAAAUU    CGG UGUG c  g
  |||||||||||    ||| |||| |   
  GUCGCCUUUGA    GCC AUac g  u
GA           GUAU   C    c uu 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_144429: 102-158 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-55

Mature hpo-miR-55-5p

• Accession: MIMAT0040450
• Description: Heligmosomoides polygyrus hpo-miR-55-5p mature miRNA
• Sequence: 1 - CGGUGGAAAUUGUUCGGUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-55-3p

• Accession: MIMAT0040451
• Description: Heligmosomoides polygyrus hpo-miR-55-3p mature miRNA
• Sequence: 35 - UACCCGUAUGAGUUUCCGCUGAG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488