Stem-loop hpo-mir-5885b

Accession

MI0032676

Description

Heligmosomoides polygyrus hpo-mir-5885b precursor miRNA

Sequence

uccgaacgacAGGGUAUCGGUGGUGAUCUGGUAagcaucucgcuuaUGAGAUCACGCCUAUAUUCGCUuucggcgagu
.(((((.(.(.((((((.((((.((((((.((((((.....)))))).)))))))))).)))))))).))))).....

Structure

----u     c a A      C    G      G      a 
     ccgaa g c GGGUAU GGUG UGAUCU GUAagc u
     ||||| | | |||||| |||| |||||| |||||| c
     ggcuu C G CUUAUA CCGC ACUAGA Uauucg u
ugagc     U - -      U    -      G      c 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_98727: 1885-1962 [-]

Mature hpo-miR-5885b-5p

• Accession: MIMAT0040438
• Description: Heligmosomoides polygyrus hpo-miR-5885b-5p mature miRNA
• Sequence: 11 - AGGGUAUCGGUGGUGAUCUGGUA - 33
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-5885b-3p

• Accession: MIMAT0040439
• Description: Heligmosomoides polygyrus hpo-miR-5885b-3p mature miRNA
• Sequence: 47 - UGAGAUCACGCCUAUAUUCGCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488