Stem-loop hpo-mir-5899a

Accession

MI0032673

Description

Heligmosomoides polygyrus hpo-mir-5899a precursor miRNA

Sequence

CAGGCUAUGCAUUCCGUGUGcauuuucaaugacugUACCCGUAAUGUACAUAGCUUGAG
(((((((((((((.((.(((((.((.....)).))))).)).))))..)))))))))..

Structure

--         --    C  U     u  u 
  CAGGCUAUG  CAUU CG GUGca uu c
  |||||||||  |||| || ||||| || a
  GUUCGAUAC  GUAA GC CAUgu ag a
GA         AU    U  C     c  u 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_222843: 5908-5966 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5899a

Mature hpo-miR-5899a-5p

• Accession: MIMAT0040432
• Description: Heligmosomoides polygyrus hpo-miR-5899a-5p mature miRNA
• Sequence: 1 - CAGGCUAUGCAUUCCGUGUG - 20
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-5899a-3p

• Accession: MIMAT0040433
• Description: Heligmosomoides polygyrus hpo-miR-5899a-3p mature miRNA
• Sequence: 36 - UACCCGUAAUGUACAUAGCUUGAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488