Stem-loop hpo-mir-54a

Accession

MI0032672

Description

Heligmosomoides polygyrus hpo-mir-54a precursor miRNA

Sequence

CGGGUCAUUAUUUACGGACGACacgcuugugaugUACCCGUAAUGAUAAUGAUCCCGA
((((((((((((((((((((.(((....))).)))..)))))..)))))))).)))).

Structure

-    -        --     --   A   g 
 CGGG UCAUUAUU  UACGG  ACG Cac c
 |||| ||||||||  |||||  ||| |||  
 GCCC AGUAAUAG  AUGCC  Ugu gug u
A    U        UA     CA   a   u 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_222843: 5116-5173 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-54a

Mature hpo-miR-54a-5p

• Accession: MIMAT0040430
• Description: Heligmosomoides polygyrus hpo-miR-54a-5p mature miRNA
• Sequence: 1 - CGGGUCAUUAUUUACGGACGAC - 22
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-54a-3p

• Accession: MIMAT0040431
• Description: Heligmosomoides polygyrus hpo-miR-54a-3p mature miRNA
• Sequence: 35 - UACCCGUAAUGAUAAUGAUCCCGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488