Stem-loop hpo-mir-100

Accession

MI0032667

Description

Heligmosomoides polygyrus hpo-mir-100 precursor miRNA

Literature search

1 open access papers mention hpo-mir-100
(5 sentences)

Sequence

AACCCGUAGAUCCGAACUUGUGUucaucauugugcuacACAGGCUCGGCUACUGGUAGA
.(((.((((..((((.(((((((.(((....)))..))))))).)))))))).)))...

Structure

--A   C    AU    A       -u   c 
   ACC GUAG  CCGA CUUGUGU  cau a
   ||| ||||  |||| |||||||  |||  
   UGG CAUC  GGCU GGACAca  gug u
AGA   U    --    C       uc   u 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_232277: 709-767 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-100

Mature hpo-miR-100-5p

• Accession: MIMAT0040420
• Description: Heligmosomoides polygyrus hpo-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUGU - 23
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-100-3p

• Accession: MIMAT0040421
• Description: Heligmosomoides polygyrus hpo-miR-100-3p mature miRNA
• Sequence: 39 - ACAGGCUCGGCUACUGGUAGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488