Stem-loop pal-let-7a-1

Accession

MI0032320

Description

Pteropus alecto pal-let-7a-1 precursor miRNA

Literature search

1 open access papers mention pal-let-7a-1
(1 sentences)

Sequence

380750 reads, 112670.0 reads per million, 1 experiments

UGAGGUAGUAGGUUGUAUAGUUUggggcucugcccugcuaugggauaaCUAUACAAUCUACUGUCUUUCc
.(((((((((((((((((((((((((((...)))))).........)))))))))))))))))))))...

Structure

--U                     ---------      u 
   GAGGUAGUAGGUUGUAUAGUU         Uggggc  
   |||||||||||||||||||||         |||||| c
   UUCUGUCAUCUAACAUAUCaa         gucccg  
cCU                     uaggguauc      u 

Annotation confidence High

Genome context

KB030944.1: 114657-114726 [-]

Mature pal-let-7a-5p

• Accession: MIMAT0039772
• Description: Pteropus alecto pal-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUUU - 23
• Evidence: experimental ; Illumina [1]

Mature pal-let-7a-3p

• Accession: MIMAT0039773
• Description: Pteropus alecto pal-let-7a-3p mature miRNA
• Sequence: 49 - CUAUACAAUCUACUGUCUUUC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682