Stem-loop cja-mir-9964

Accession

MI0032286

Description

Callithrix jacchus cja-mir-9964 precursor miRNA

Sequence

gcagaagugccgagggacuuuuccagucacggcgUCUGCACAUUGCACUCCACUGGCcuuuccaccaagccgugggguucauggugcagauuucgagcuugggucuuugggcauuuggaugu
....(((((((.((((((....((((.(.(((.((((((((..((.(((((((.(((...........)))))))))).))..)))))))).))).).)))))))))).)))))))......

Structure

--gcag       g      uuuu    u a   c        AU  C       U   cuuu 
      aagugcc agggac    ccag c cgg gUCUGCAC  UG ACUCCAC GGC    c
      ||||||| ||||||    |||| | ||| ||||||||  || ||||||| |||    c
      uuuacgg uuucug    gguu g gcu uagacgug  ac uggggug ccg    a
uguagg       g      ----    c a   u        gu  u       -   aacc 

Annotation confidence Not enough data

Genome context

chr6: 149342805-149342926 [-]

Mature cja-miR-9964

• Accession: MIMAT0039739
• Description: Callithrix jacchus cja-miR-9964 mature miRNA
• Sequence: 35 - UCUGCACAUUGCACUCCACUGGC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857