Stem-loop cja-mir-9960

Accession

MI0032282

Description

Callithrix jacchus cja-mir-9960 precursor miRNA

Sequence

gugucaguaugacugcauuaccuagacaauuccaucccaagugggcacuggauauaaagauacgUCCACAGUGGUGGAGUUGUUcagguggugcagcagcac
((((.....((.(((((((((((.((((((((((((....((((((.................))))))...)))))))))))).)))))))))))))))))

Structure

    cagua  a           a            ccaa      acuggau 
gugu     ug cugcauuaccu gacaauuccauc    gugggc       a
||||     || ||||||||||| ||||||||||||    ||||||       u
cacg     ac gacguggugga UUGUUGAGGUGG    CACCUg       a
    -----  -           c            -UGA      cauagaa 

Annotation confidence Not enough data

Genome context

chrX: 138906307-138906408 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-9960

Mature cja-miR-9960

• Accession: MIMAT0039735
• Description: Callithrix jacchus cja-miR-9960 mature miRNA
• Sequence: 65 - UCCACAGUGGUGGAGUUGUU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857