Stem-loop cja-mir-1b

Accession

MI0032152

Description

Callithrix jacchus cja-mir-1b precursor miRNA

Sequence

ugcaguuuaauucucucuuggugguuuauugccuaccaaaaaUACAUACUUCUUUACAUUCCAuagcauuguauguucauaUGGGUACAUAAAGAAGUAUGUacucugaguagguauuacuaaguuguuagcugua
(((((((.(((.....(((((((((.....((((((((....((((((((((((((...((((((((((...))))...))))))....))))))))))))))...)).)))))))))))))))..))))))))))

Structure

       u   ucucu         uuauu      -  aaaa              -CAU      ---    u 
ugcaguu aau     cuugguggu     gccuac ca    UACAUACUUCUUUA    UCCAua   gcau  
||||||| |||     |||||||||     |||||| ||    ||||||||||||||    ||||||   |||| g
augucga uug     gaaucauua     uggaug gu    aUGUAUGAAGAAAU    GGGUau   ugua  
       -   ---uu         -----      a  -cuc              ACAU      acu    u 

Annotation confidence Not enough data

Genome context

chr13: 59037891-59038026 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-1b

Mature cja-miR-1b-5p

• Accession: MIMAT0039616
• Description: Callithrix jacchus cja-miR-1b-5p mature miRNA
• Sequence: 43 - UACAUACUUCUUUACAUUCCA - 63
• Evidence: experimental ; Illumina [1]

Mature cja-miR-1b-3p

• Accession: MIMAT0039617
• Description: Callithrix jacchus cja-miR-1b-3p mature miRNA
• Sequence: 82 - UGGGUACAUAAAGAAGUAUGU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857