Stem-loop cja-mir-138

Accession

MI0032127

Description

Callithrix jacchus cja-mir-138 precursor miRNA

Sequence

cccagaggaggaagccggcggaguucugguaucguugcugcAGCUGGUGUUGUGAAUCAGGCcgacgagcagcgcauccucuuacccggcuauuucacgacaccaggguugcaucauacccauccucuccaggcgagccucguggg
((((((((.....(((((.((((....(((((.(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).))))))....)))))).)))...)))).))))

Structure

    -    aggaa   -  c    uucu     c u   u  AG             UCA     -ac   c  cg 
ccca gagg     gcc gg ggag    gguau g ugc gc  CUGGUGUUGUGAA   GGCcg   gag ag  c
|||| ||||     ||| || ||||    ||||| | ||| ||  |||||||||||||   |||||   ||| ||   
gggu cucc     cgg cc ucuc    ccaua c acg ug  gaccacagcacuu   ucggc   uuc uc  a
    g    --gag   a  -    cuac     - u   u  -g             -ua     cca   -  cu 

Annotation confidence Not enough data

Genome context

chr20: 10827033-10827178 [+]

Mature cja-miR-138

• Accession: MIMAT0039592
• Description: Callithrix jacchus cja-miR-138 mature miRNA
• Sequence: 42 - AGCUGGUGUUGUGAAUCAGGC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857