Stem-loop cja-mir-218

Accession

MI0032061

Description

Callithrix jacchus cja-mir-218 precursor miRNA

Sequence

gguccugccuuuggccuagugguugguguagugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcaagguaugaguaaaacaugguuccgucaagcaccauggaacgucacgcagcuuucuacagcaugacaagcugcugaggcuuaaaucaggauu
.((((((.....(((((((((((((.(((((.((....((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).)))).))))).))......)))))).))))).....)))))).

Structure

g      ccuuu     -      ------  g     u  uaau  a   a   u      U         CU        gg    aag 
 guccug     ggccu aguggu      ug uguag ga    gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 ||||||     ||||| ||||||      || ||||| ||    || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 uaggac     ucgga ucgucg      ac acauc uu    cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
u      uaaau     g      aacagu  g     u  ----  a   a   c      c         cc        -a    agu 

Annotation confidence Not enough data

Genome context

chr3: 170692316-170692488 [-]

Mature cja-miR-218

• Accession: MIMAT0039531
• Description: Callithrix jacchus cja-miR-218 mature miRNA
• Sequence: 55 - UUGUGCUUGAUCUAACCAUGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857