Stem-loop cja-mir-541

Accession

MI0032026

Description

Callithrix jacchus cja-mir-541 precursor miRNA

Sequence

gggaaaggauucugcugucggucccacuccaaaguucacagaaugggUGGUGGGCACAGAAUCCGGACUc
(((...((((((((.((((.(..((((((....((((...))))))))))).))))))))))))...)))

Structure

   aaa        c    g uc      caaa    a 
ggg   ggauucug uguc g  ccacuc    guuc  
|||   |||||||| |||| |  ||||||    |||| c
cUC   CCUAAGAC ACGG U  GGUggg    uaag  
   AGG        -    G --      ----    a 

Annotation confidence Not enough data

Genome context

chr10: 126983339-126983408 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from cja-mir-541

Mature cja-miR-541

• Accession: MIMAT0039500
• Description: Callithrix jacchus cja-miR-541 mature miRNA
• Sequence: 48 - UGGUGGGCACAGAAUCCGGACU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857