Stem-loop cja-mir-423

Accession

MI0032008

Description

Callithrix jacchus cja-mir-423 precursor miRNA

Sequence

ccguacauuuuccaggauggaagcccgaaguuugagggagaaacuugugaggaaauaaaggaaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuaccccgcgcuugaguuucuccccgcuuggaugcucucaggggcagugugaag
...(((((((((((...)))))).((.((((..(.((((((((((((((.((......(((((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))))...)).)))..)))))))))))))))))).(((((....))))))))))...

Structure

ccg     uuuccaggauggaagc  g    uu a           --   a  aaauaa       u            -AG   G    A     cua 
   uacau                cc aagu  g gggagaaacuu  gug gg      aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
   |||||                || ||||  | |||||||||||  ||| ||      ||||||| ||||||||||||   ||| |||| |||||   u
   gugug                gg uucg  c cccucuuugag  cgc cc      uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
gaa     -acggggacucucgua  -    -- -           uu   g  ---cca       u            GAG   G    -     ccu 

Annotation confidence Not enough data

Genome context

chr5: 93956151-93956341 [-]

Mature cja-miR-423-5p

• Accession: MIMAT0039483
• Description: Callithrix jacchus cja-miR-423-5p mature miRNA
• Sequence: 71 - UGAGGGGCAGAGAGCGAGACUUU - 93
• Evidence: experimental ; Illumina [1]

Mature cja-miR-423-3p

• Accession: MIMAT0039484
• Description: Callithrix jacchus cja-miR-423-3p mature miRNA
• Sequence: 107 - AGCUCGGUCUGAGGCCCCUCAGU - 129
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596