Stem-loop cja-mir-342

Accession

MI0031997

Description

Callithrix jacchus cja-mir-342 precursor miRNA

Sequence

gggcucaaggugaggggugcuaucugugauugagggacaugguuaauggaauugUCUCACACAGAAAUCGCACCCGUCaccuuggccu
((((.((((((((.((((((..((((((..(((((.((((.....)))....).)))))))))))....)))))).))))))))))))

Structure

    u        g      --ua      au     g ----   g 
gggc caagguga gggugc    ucugug  ugagg a    cau g
|||| |||||||| ||||||    ||||||  ||||| |    ||| u
uccg guuccaCU CCCACG    AGACAC  ACUCU u    gua u
    -        G      CUAA      --     g uaag   a 

Annotation confidence Not enough data

Genome context

chr10: 125999887-125999974 [+]

Mature cja-miR-342

• Accession: MIMAT0039473
• Description: Callithrix jacchus cja-miR-342 mature miRNA
• Sequence: 55 - UCUCACACAGAAAUCGCACCCGUC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857