Stem-loop cja-mir-200c

Accession

MI0031946

Description

Callithrix jacchus cja-mir-200c precursor miRNA

Sequence

gggugggggcccucgucuuacccagcaguguuugggugcgguugggagucucUAAUACUGCCGGGUAAUGAUGGAggccccugccc
(((((((((((.(((((((((((.((((((((.(((.((........))))).)))))))).)))))).))))).)))))))))))

Structure

           c     -      a        u   u  ggu 
gggugggggcc ucguc uuaccc gcaguguu ggg gc   u
||||||||||| ||||| |||||| |||||||| ||| ||    
cccguccccgg GGUAG AAUGGG CGUCAUAA cuc ug   g
           A     U      C        U   -  agg 

Annotation confidence Not enough data

Genome context

chr9: 18818084-18818169 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-200c

Mature cja-miR-200c

• Accession: MIMAT0039426
• Description: Callithrix jacchus cja-miR-200c mature miRNA
• Sequence: 53 - UAAUACUGCCGGGUAAUGAUGGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857